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- EMBO Practical Course Strategies in Macromolecular Structure Determination at 3rd Generation Synchrotron Sources
- Programme EMBO Practical Course Strategies in Macromolecular Structure Determination at 3rd Generation Synchrotron Sources
Programme EMBO Practical Course Strategies in Macromolecular Structure Determination at 3rd Generation Synchrotron Sources
Overview Programme
---- | 17 June Day 1 |
18 June Day 2 |
19 June Day 3 |
20 June Day 4 |
21 June Day 5 |
22 June Day 6 |
23 June Day 7 |
24 June Day 8 |
8:00am to 9:00am |
Safety Training Session |
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9:00am to 10:30am |
Introduction & Theory Session |
Substructures & Phasing Session |
Beamline Practical Session |
Substructure Solution Session |
Automated Methods Session |
Buffer Day | Model Building Session |
Novel Methods Session |
11:00am to 12:30am |
Introduction & Theory Session |
Substructures & Phasing Session |
Beamline Practical Session |
Tutorials Substructure Solution |
Tutorials Automated Methods |
Buffer Day | High Resolution Session |
Novel Methods Session |
1:30pm to 3:30pm |
Introduction & Theory Session |
Experimental Aspects Session |
Beamline Practical Session |
Tutorials Substructure Solution |
Tutorials Automated Methods |
Buffer Day | Beamline Practical Session |
Automation Session |
4:00pm to 6:00pm |
Poster Presentations Session |
Experimental Aspects Session |
Beamline Practical Session |
Tutorials Substructure Solution |
Tutorials Automated Methods |
Buffer Day | Beamline Practical Session |
Student Presentations Session |
6:00pm to 7:00pm |
Burning Questions Session |
Special Topic Session |
Special Topic Session |
Special Topic Session |
Buffer Day | Special Topic Session |
Burning Questions Session |
Detailed Programme
All seminars will be held in the ILL Chadwick Ampitheatre.
Note: Titles are subject to change.
Tuesday 17 June 2003
Morning Session: Introduction & Theory (Chair: W. Shepard)
9:00-9:30 Welcome & Introduction to Practical Course R. Ravelli & W. Shepard
9:30-10:00 Challenges in Structural Biology S. Cusack
10:00-10:30 Introduction to 3rd Generation Sources S. Larsen
10:30-11:00 Break
11:00-11:45 Introduction to the Phase Problem in Macromolecular Crystallography E. Dodson
11:45-12:30 Basics of Anomalous Scattering S. McSweeney
12:30-14:00 Lunch in the EMBL-ILL Hallway
Afternoon Session (Chair: M. Walsh)
14:00-14:45 Basics of MAD & SAD Phasing Z. Dauter
14:45-15:30 Historical Introduction to Direct Methods G. Sheldrick
15:30-16:00 Basics of Molecular Replacement R. Read
16:00-16:30 Break
16:30-17:00 The principles of Density Modification E. Dodson
17:00-18:00 Student Poster Presentations Chair: M. Walsh
18:00-19:00 Poster Ice Breaker in EMBL-ILL Hallway
19:00-20:00 Dinner in ESRF Canteen
Wednesday 18 June 2003
Morning Session: Substructures, Phasing and Experiments (Chair: G. Leonard)
9:00-9:45 Direct Methods C. Weeks
9:45-10:30 Automated heavy atom location P. Adams
10:30-11:00 Break
11:00-11:45 Maximum Likelihood & Error handling in Phasing G. Bricogne
11:45-12:30 Experimental phasing R. Read
12:30-14:00 Global Phasing Lunch in the EMBL-ILL Hallway
Afternoon Session: Data Collection & Processing (Chair: S. McSweeney)
14:00-14:45 Experimental Considerations W. Shepard
14:45-15:30 Data Collection Strategies Z. Dauter
15:30-15:50 Automated Data Collection & Integration; Mosflm & DNA H. Powell
15:50-16:10 Methods employed by XDS for automatic processing of rotation images W. Kabsch
16:10-16:30 Integration of weak and/or overlapped diffraction patterns with PrOW D. Bourgeois
16:30-17:00 Break
Evening Session: Radiation Damage (Chair: E. Mitchell)
17:00-17:30 Hendersen Limit E. Garman
17:30-17:50 Zero Dose Extrapolation K. Diederichs
17:50-18:10 Temperature-dependent solvent behaviour and radiation damage in proteins M. Weik
18:10-18:30 Radiation-Damage Induced Phasing R. Ravelli
18:30-18:40 Global Phasing Poster Price
18:40-19:30 Burning Questions Session (Chair: E. Garman)
19:30-20:30 Dinner in ESRF Canteen
Thursday 19 June 2003
Morning Session: Safety Training & Beamline Practicals
8:00 Groups 1, 2 & 3 meet at EMBL-ILL Hallway M.J. Villot
8:10-8:30 Safety Training on BM30 for Groups 1, 2 & 3 I. Vernet
8:30 Groups 4, 5 & 6 meet at EMBL-ILL Hallway M.J. Villot
8:40-9:00 Safety Training on BM30 for Groups 4, 5 & 6 I. Vernet
9:00-12:30 Beamline Practicals
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BM14 ( M. Walsh / H. Belrhali) group 1
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BM30 ( J.-L. Ferrer / R. Kahn) group 2
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ID14-EH1 ( D. Hall / I. Leiros) group 3
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ID14-EH2 ( E. Mitchell / J. McCarthy) group 4
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ID14-EH4 ( R. Ravelli / A. McCarthy) group 5
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ID29 ( W. Shepard / P. Legrand / G. Leonard) group 6
12:30-14:00 Lunch at ESRF Canteen
Afternoon Session: Beamline Practicals
14:00-17:30 Beamline Practicals
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BM14 ( M. Walsh / H. Belrhali) group 5
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BM30 ( J.-L. Ferrer / R. Kahn) group 6
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ID14-EH1 ( D. Hall / I. Leiros) group 1
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ID14-EH2 ( E. Mitchell / J. McCarthy) group 2
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ID14-EH4 ( R. Ravelli / A. McCarthy) group 3
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ID29 ( W. Shepard / P. Legrand / G. Leonard) group 4
18:00-19:00 The Theoretical Basis of the Joint Probability Distribution Functions for SIR-MIR,SIRAS-MIRAS,SAD-MAD C. Giacovazzo
19:00-20:00 Dinner in ESRF Canteen
Friday 20 June 2003
Morning Session: Substructure Solution & Tutorials (Chair: J.L. Ferrer)
9:00-9:30 SnB & BnP C. Weeks
9:30-10:00 Substructure Solution with SHELXD G. Sheldrick
10:00-10:30 PHENIX: new software for automated structure determination P. Adams
10:30-11:00 Break
11:00-12:30 Tutorials
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SnB & BnP ( C. Weeks) groups 1 & 2 in EMBL Graphics Room
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SHELXD/E ( G. Sheldrick / G. Bunkoczi) groups 3 & 4 in ESRF Graphics Room
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CNS ( P. Adams/ R. Read) groups 5 & 6 in EMBL Seminar Room
12:30-14:00 Lunch at ESRF Canteen
Afternoon Session: Tutorials
14:00-15:30 Tutorials
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SnB & BnP ( C. Weeks) groups 5 & 6 in EMBL Graphics Room
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SHELXD/E ( G. Sheldrick / G. Bunkoczi) groups 1 & 2 in ESRF Graphics Room
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CNS ( P. Adams / R. Read) groups 3 & 4 in EMBL Seminar Room
15:30-16:00 Break
16:00-17:30 Tutorials
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SnB & BnP ( C. Weeks) groups 3 & 4 in EMBL Graphics Room
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SHELXD/E ( G. Sheldrick / G. Bunkoczi) groups 5 & 6 in ESRF Graphics Room
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CNS ( P. Adams / R. Read) groups 1 & 2 in EMBL Seminar Room
18:00-19:00 Special Topic: Medical Beamline G. LeDuc
19:30-22:00 Dinner in Restaurant
Saturday 21 June 2003
Morning Session: Automatic Phasing & Tutorials (Chair: R. Ravelli)
9:00-9:45 SOLVE Li-Wei Hung
9:45-10:30 AutoSHARP G. Evans
10:30-11:00 Break
11:00-12:30 Tutorials
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Open Session groups 1 & 2 in EMBL Graphics Room
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SOLVE ( Li-Wei Hung) groups 3 & 4 in ESRF Graphics Room
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autoSHARP ( G. Evans / G. Bricogne) groups 5 & 6 in EMBL Seminar Room
12:30-14:00 Lunch at ESRF Canteen
Afternoon Session: Tutorials
14:00-15:30 Tutorials
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Open Session groups 5 & 6 in EMBL Graphics Room
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SOLVE ( Li-Wei Hung) groups 1 & 2 in ESRF Graphics Room
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autoSHARP ( G. Evans / G. Bricogne) groups 3 & 4 in EMBL Seminar Room
15:30-16:00 Break
16:00-17:30 Tutorials
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Open Session groups 3 & 4 in EMBL Graphics Room
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SOLVE ( Li-Wei Hung) groups 5 & 6 in ESRF Graphics Room
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autoSHARP ( G. Evans / G. Bricogne) groups 1 & 2 in EMBL Seminar Room
18:00-19:00 Special Topic: Phasing from SAXS Envelopes Q. Hao
19:00-20:00 Dinner in ESRF Canteen
20:00 Fete de la Musique
Sunday 22 June 2003
Buffer Day
12:00-13:00 Lunch at ESRF Canteen
13:00-23:30 Excursion Chartreuse & Banquet at the Auberge de Sarcenas
Monday 23 June 2003
Morning Session: Model Building & High Resolution (Chair: G. Leonard)
9:00-9:45 ARPwARP A. Perrakis
9:45-10:30 Model Building using RESOLVE Li-Wei Hung
10:30-11:00 High Throughput Phasing with SHELXE G. Sheldrick
11:00-11:30 Break
11:30-12:00 Applications of the JPDF method to SIR-MIR,SIRAS-MIRAS,SAD-MAD cases. Ab initio techniques C. Giacovazzo
12:00-12:30 Ultra-high Resolution studies on Aldose Reductase A. Podjarny
12:30-14:00 Lunch in the EMBL-ILL Hallway
Afternoon Session: Beamline Practicals
14:00-18:30 Beamline Practicals & Autobuilding tutorials
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BM14 ( M. Walsh / H. Belrhali) group 3
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BM30 ( J.-L. Ferrer / R. Kahn) group 4
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ID14-EH1 ( I. Leiros) group 5
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ID14-EH2 ( E. Mitchell / J. McCarthy) group 6
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ID14-EH4 ( R. Ravelli / A. McCarthy) group 1
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ID29 ( W. Shepard / P. Legrand / G. Leonard) group 2
18:30-19:00 Special Topic: Micro X-ray beams for Biology C. Riekel/M. Burghammer/M. Roessle
19:00-20:00 Dinner in ESRF Canteen
Tuesday 24 June 2003
Morning Session: Long X-ray Wavelengths (Chair: W. Shepard)
9:00-9:35 Ultra-long X-ray wavelengths H. Stuhrmann
9:35-10:10 Phosphor Phasing Z. Dauter
10:10-10:30 Sulphur Phasing E. Micossi
10:30-11:00 Break
Morning Session: Medium & Short X-ray Wavelengths (Chair: A. McCarthy)
11:00-11:20 Remote SAD G. Leonard
11:20-11:40 Iodine Phasing G. Evans
11:40-12:00 Novel Heavy Atom Compounds M. Stelter
12:00-12:30 Ultra-short X-ray Wavelengths P. Tucker
12:30-14:00 Lunch in the EMBL-ILL Hallway
Afternoon Session: Automation (Chair: E. Mitchell)
14:00-14:20 Automation on BM30 J.L. Ferrer
14:20-14:40 Sample Changer & Microdiffractometer F. Cipriani
14:40-15:00 Auto Edge Scans W. Shepard
15:00-15:20 ABA and DNA, O. Svensson
15:20-15:40 Automation of MX D. Nurizzo
15:40-16:30 Break & Student Presentation Preparations
16:30-17:30 Student Presentations Chair: S. McSweeney
17:30-19:00 Round Table discussion & Burning Questions Chair: Z. Dauter
19:00-20:00 Dinner in ESRF Canteen